CDS

Accession Number TCMCG007C10083
gbkey CDS
Protein Id XP_009124989.1
Location complement(join(28635731..28635835,28635925..28635999,28636384..28636441,28636521..28636591,28636962..28637633,28638152..28638679))
Gene HD1
GeneID 103850038
Organism Brassica rapa

Protein

Length 502aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009126741.3
Definition histone deacetylase 19 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category B
Description Belongs to the histone deacetylase family. HD Type 1 subfamily
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K06067        [VIEW IN KEGG]
EC 3.5.1.98        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko04110        [VIEW IN KEGG]
ko04213        [VIEW IN KEGG]
ko04330        [VIEW IN KEGG]
ko04919        [VIEW IN KEGG]
ko05016        [VIEW IN KEGG]
ko05034        [VIEW IN KEGG]
ko05165        [VIEW IN KEGG]
ko05169        [VIEW IN KEGG]
ko05200        [VIEW IN KEGG]
ko05202        [VIEW IN KEGG]
ko05203        [VIEW IN KEGG]
ko05220        [VIEW IN KEGG]
map04110        [VIEW IN KEGG]
map04213        [VIEW IN KEGG]
map04330        [VIEW IN KEGG]
map04919        [VIEW IN KEGG]
map05016        [VIEW IN KEGG]
map05034        [VIEW IN KEGG]
map05165        [VIEW IN KEGG]
map05169        [VIEW IN KEGG]
map05200        [VIEW IN KEGG]
map05202        [VIEW IN KEGG]
map05203        [VIEW IN KEGG]
map05220        [VIEW IN KEGG]
GOs GO:0000118        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004407        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006473        [VIEW IN EMBL-EBI]
GO:0006475        [VIEW IN EMBL-EBI]
GO:0006476        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006955        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009292        [VIEW IN EMBL-EBI]
GO:0009294        [VIEW IN EMBL-EBI]
GO:0009405        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009611        [VIEW IN EMBL-EBI]
GO:0009814        [VIEW IN EMBL-EBI]
GO:0009861        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016569        [VIEW IN EMBL-EBI]
GO:0016570        [VIEW IN EMBL-EBI]
GO:0016573        [VIEW IN EMBL-EBI]
GO:0016575        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016810        [VIEW IN EMBL-EBI]
GO:0016811        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018205        [VIEW IN EMBL-EBI]
GO:0018393        [VIEW IN EMBL-EBI]
GO:0018394        [VIEW IN EMBL-EBI]
GO:0019213        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033558        [VIEW IN EMBL-EBI]
GO:0035601        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043543        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044419        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044764        [VIEW IN EMBL-EBI]
GO:0045087        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051094        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051240        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:0098732        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1902459        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]
GO:2000036        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGACACCGGAGGAAACTCGCTGGCCTCTGGACCAGACGGTGTGAAGAGGAAAGTGTGCTACTTCTACGACCCAGAGGTTGGGAACTACTACTACGGCCAAGGCCACCCCATGAAGCCTCACCGCATCCGCATGACGCACGCTCTCCTCGCTCACTACGGTCTCCTCCAGCACATGCAAGTCCTCAAGCCTTTCCCCGCCCGTGACCGTGACCTCTGCCGCTTCCACGCCGACGACTACGTCTCCTTTCTCCGCAGCATTACGCCCGAGACTCAGCAGGATCAGATCCGCCAGCTCAAGCGGTTCAACGTTGGTGAAGACTGTCCTGTCTTTGACGGGCTTTATTCCTTTTGTCAGACGTATGCTGGTGGCTCTGTTGGTGGTTCTGTTAAGCTTAACCATGGGCTTTGTGATATTGCTATTAACTGGGCTGGTGGTCTTCATCATGCTAAGAAGTGTGAGGCCTCTGGCTTCTGCTACGTTAATGATATCGTCTTAGCTATCCTTGAGCTGCTTAAGCAGCATGAGCGTGTTCTGTACGTTGATATCGACATTCACCACGGGGACGGAGTGGAGGAGGCGTTTTACGCTACCGACAGGGTCATGACCGTCTCGTTCCATAAGTTCGGAGACTACTTCCCCGGTACAGGCCACATACAAGACATTGGCTACGGAAGTGGAAAGTACTATTCACTCAACGTACCACTGGACGATGGTATCGACGATGAGAGCTATCATCTCTTGTTCAAACCCATCATGGGGAAAGTGATGGAAATTTTCAAACCAGGTGCGGTCGTACTCCAATGCGGCGCTGATTCCTTGTCTGGCGATAGGCTGGGATGCTTTAACCTCTCCATCAAAGGCCATGCCGAGTGTGTCAAGTTCATGAGATCTTTCAACGTTCCGTTACTGCTCCTTGGTGGTGGTGGTTACACCATCCGCAACGTTGCGCGTTGCTGGTGCTACGAGACTGGAGTTGCGCTTGGGATCGAGGTCGAGGACAAGATGCCGGAGCATGAGTACTATGAGTACTTTGGTCCGGACTATACGCTCCACGTTGCTCCGAGTAACATGGAGAACAAGAACTCTCGGCAGATGCTTGAAGTGATTCGTAATGACTTGCTCCAGAATCTCTCGAAGCTTCAGCATGCTCCTAGTGTGCCGTTTCAGGAAAGGCCGCCAGATACTGAGACTCCTGAGGTAGATGAAGACCAAGAAGATGGAGATAAAAGATGGGATGCAGATTCTGACATGGATGTAGATGATGATCGTAAACCTATACCAAGCAGAGTGAAAAGAGAAGCTGTTGAGCCTGATGGAAAGGACAAGGATGGAGTGAAAGGAGTGATGGAGCGTGGGAAAGGTTTTGATGTGGGCATGGAGGAGAGTGGAAGCACCACCAAGGTTTCAGGAGTAAACTCAGTGGGAATGGATGAAGCAGGTGTGAAAATGGAAGAGGAAGGCACAACAAACAAGTCAGGGGGAGATCAAGTGTTTCCTAAAACCTAA
Protein:  
MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPIMGKVMEIFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVEDKMPEHEYYEYFGPDYTLHVAPSNMENKNSRQMLEVIRNDLLQNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRWDADSDMDVDDDRKPIPSRVKREAVEPDGKDKDGVKGVMERGKGFDVGMEESGSTTKVSGVNSVGMDEAGVKMEEEGTTNKSGGDQVFPKT